What's new in this release
Version 3.5.6 [Mar 19 2009, Petr Danecek]
- A simple display filter on the job history page.
- Download page.
- Archived jobs are now named All-$(JOB_NUM).zip instead of All.zip.
- Bug fixes in MotifSearch: profile substring and substring search.
Version 3.5.5 [Mar 5 2009, Petr Danecek]
- The BLAST input sequence is listed first in the ClustalW alignment.
- MolMol script in 3D variability.
- Minor bug fixes.
Version 3.4.4 [Feb 12 2009, Petr Danecek]
- Numerous changes in job handling: added the possibility to save complete jobs and upload archived jobs; email notifications about jobs which are about to expire; possibility to extend grace period.
- Color scale in 3D variability.
- Improved MotifSearch score filtering.
- Bug fixes.
Version 3.3.1 [Feb 2 2009, Petr Danecek]
- Blast search interface added to Alignments.
- Bug fixes in HTML output of MotifMaker.
Version 3.2.0 [Jan 2 2009, Petr Danecek]
- MotifSearch can now search for arbitrary strings (the "Create New Motif" option).
- Bug fixes in MotifSearch.
Version 3.1.2 [Dec 8 2008, Petr Danecek]
- Job history: display total disk usage, warn about how many days left until the project will be deleted.
- New MotifSearch display for one sequence.
- MotifSearch can now work with more sequences in the "single-sequence search mode".
- Bug fixes in the 3D variability motif display.
- Better treatment of total score calculations in MotifSearch.
Version 3.0.0 [Dec 4 2008, Petr Danecek]
- New web interface.
- Support for other quantitative descriptors than the default ones (Venkatarajan, Braun 2001).
- Background frequencies can be calculated on fly with different number of intervals.
- New total entropy calculation methods.
- New type of "similarity" motifs.
- Bug fixes, speedup, code cleanup.
- Rewritten internal PCPMer engine (MotifMaker, MotifSearch, 3D Variability).
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